Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773702

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773702


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M329Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000242159 ABCF2P1 ATP binding cassette subfamily F member 2 pseudogene 1 3.5850 0.0000
2 ENSG00000225598 novel transcript 3.1699 0.0000
3 ENSG00000280108 novel transcript 3.1699 0.0000
4 ENSG00000235389 novel transcript 3.1133 0.0000
5 ENSG00000257199 RAN binding protein 1 (RANBP1) pseudogene 3.0242 0.0000
6 ENSG00000234108 cytochrome c oxidase subunit V1a polypeptide 1 (COX6A1) pseudogene 3.0000 0.0000
7 ENSG00000254195 TPM3P3 tropomyosin 3 pseudogene 3 3.0000 0.0000
8 ENSG00000275881 Metazoan signal recognition particle RNA 3.0000 0.0000
9 ENSG00000202485 RNU6-499P RNA, U6 small nuclear 499, pseudogene 2.9037 0.0000
10 ENSG00000217414 DDX18P3 DEAD-box helicase 18 pseudogene 3 2.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000165527 ARF6 ADP ribosylation factor 6 -2.5046 0.0000
63172 ENSG00000206920 RNY1P6 RNY1 pseudogene 6 -2.5045 0.0000
63171 ENSG00000180549 FUT7 fucosyltransferase 7 -2.5042 0.0000
63170 ENSG00000204961 PCDHA9 protocadherin alpha 9 -2.5039 0.0000
63169 ENSG00000188290 HES4 hes family bHLH transcription factor 4 -2.5024 0.0000
63168 ENSG00000120055 C10orf95 chromosome 10 open reading frame 95 -2.5023 0.0000
63167 ENSG00000243314 ribosomal protein S12 (RPS12) pseudogene -2.5018 0.0029
63166 ENSG00000248479 novel transcript -2.5014 0.0044
63165 ENSG00000260282 EIF4EBP2P2 eukaryotic translation initiation factor 4E binding protein 2 pseudogene 2 -2.5008 0.0000
63164 ENSG00000213540 TXN2P1 TXN2 pseudogene 1 -2.5002 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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