Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773703

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773703


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M330Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000184227 ACOT1 acyl-CoA thioesterase 1 3.1073 0.0000
2 ENSG00000249562 FERM domain containing 7 (FRMD7) pseudogene 2.5850 0.0000
3 ENSG00000224185 SNX18P9 sorting nexin 18 pseudogene 9 2.3999 0.0000
4 ENSG00000131808 FSHB follicle stimulating hormone subunit beta 2.3219 0.0000
5 ENSG00000223800 novel transcript 2.3219 0.0001
6 ENSG00000224827 LINC00265-2P long intergenic non-protein coding RNA 265-2, pseudogene 2.3219 0.0000
7 ENSG00000231255 novel transcript 2.3219 0.0001
8 ENSG00000252023 RNU6-581P RNA, U6 small nuclear 581, pseudogene 2.3219 0.0001
9 ENSG00000275071 NA 2.3219 0.0001
10 ENSG00000207632 MIR588 microRNA 588 2.0000 0.0013

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272967 novel transcript, antisense to ADPRH -1.9612 0.0000
63172 ENSG00000141750 STAC2 SH3 and cysteine rich domain 2 -1.9608 0.0000
63171 ENSG00000273264 novel transcript -1.9605 0.0000
63170 ENSG00000251567 novel transcript -1.9602 0.0094
63169 ENSG00000271984 novel transcript, antisense to CTSA -1.9596 0.0000
63168 ENSG00000266014 novel transcript -1.9591 0.2562
63167 ENSG00000112312 GMNN geminin DNA replication inhibitor -1.9590 0.0000
63166 ENSG00000188306 LRRIQ4 leucine rich repeats and IQ motif containing 4 -1.9590 0.0000
63165 ENSG00000197380 DACT3 dishevelled binding antagonist of beta catenin 3 -1.9588 0.0000
63164 ENSG00000100473 COCH cochlin -1.9586 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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