Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773704

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773704


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M331Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222715 MIR1911 microRNA 1911 2.3219 0.0011
2 ENSG00000248254 novel transcript 2.3089 0.0000
3 ENSG00000243951 RN7SL308P RNA, 7SL, cytoplasmic 308, pseudogene 2.0499 0.0000
4 ENSG00000200385 NA 2.0000 0.0000
5 ENSG00000226153 CHP1P3 CHP1 pseudogene 3 2.0000 0.0000
6 ENSG00000226362 FAM41AY2 family with sequence similarity 41 member A, Y-linked 2 2.0000 0.0000
7 ENSG00000228999 long intergenic non-protein coding RNA 1830 2.0000 0.0060
8 ENSG00000236187 GJA6P gap junction protein alpha 6, pseudogene 2.0000 0.0060
9 ENSG00000242339 LINC02025 long intergenic non-protein coding RNA 2025 2.0000 0.0000
10 ENSG00000244099 RPS23P3 ribosomal protein S23 pseudogene 3 2.0000 0.0060

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000043355 ZIC2 Zic family member 2 -1.9362 0.0000
63172 ENSG00000196361 ELAVL3 ELAV like RNA binding protein 3 -1.9362 0.0000
63171 ENSG00000255468 novel transcript, antisense to SLC29A2 -1.9358 0.0000
63170 ENSG00000259177 novel transcript, antisense to IQGAP1 -1.9355 0.0000
63169 ENSG00000086062 B4GALT1 beta-1,4-galactosyltransferase 1 -1.9354 0.0000
63168 ENSG00000231918 novel transcript -1.9349 0.0000
63167 ENSG00000266580 MIR4254 microRNA 4254 -1.9346 0.0000
63166 ENSG00000146674 IGFBP3 insulin like growth factor binding protein 3 -1.9341 0.0000
63165 ENSG00000250939 intraflagellar transport 122 (IFT122) pseudogene) -1.9338 0.0000
63164 ENSG00000134463 ECHDC3 enoyl-CoA hydratase domain containing 3 -1.9324 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...