Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773705

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773705


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M332Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254138 novel transcript 2.8074 0.0000
2 ENSG00000182348 ZNF804B zinc finger protein 804B 2.5850 0.0001
3 ENSG00000257752 transmembrane protein 38A (TMEM38A) 2.5850 0.0001
4 ENSG00000258767 GRAM domain containing 4 (GRAMD4) pseudogene 2.5850 0.0001
5 ENSG00000258848 GRAMD4P6 GRAM domain containing 4 pseudogene 6 2.5850 0.0001
6 ENSG00000279264 tec 2.5850 0.0000
7 ENSG00000182334 OR5P3 olfactory receptor family 5 subfamily P member 3 2.3219 0.0006
8 ENSG00000196085 SMIM7P1 SMIM7 pseudogene 1 2.3219 0.0006
9 ENSG00000198934 MAGEE1 MAGE family member E1 2.3219 0.0006
10 ENSG00000224374 novel transcript 2.3219 0.0006

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275362 Metazoan signal recognition particle RNA -1.7227 0.0000
63172 ENSG00000283464 novel pseudogene identical to IGHVII-44-2D -1.7227 0.0000
63171 ENSG00000175087 PDIK1L PDLIM1 interacting kinase 1 like -1.7225 0.0000
63170 ENSG00000154342 WNT3A Wnt family member 3A -1.7214 0.0000
63169 ENSG00000277588 MIR6806 microRNA 6806 -1.7208 0.0000
63168 ENSG00000236511 LINC01231 long intergenic non-protein coding RNA 1231 -1.7206 0.0000
63167 ENSG00000263612 novel transcript -1.7202 0.0000
63166 ENSG00000283162 STRA6-like (Stra6l) pseudogene -1.7200 0.0000
63165 ENSG00000166595 CIAO2B cytosolic iron-sulfur assembly component 2B -1.7196 0.0000
63164 ENSG00000226235 LEMD1-AS1 LEMD1 antisense RNA 1 -1.7195 0.0757

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...