Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773706

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773706


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M333Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000172399 MYOZ2 myozenin 2 2.3219 0.0004
2 ENSG00000228587 novel transcript 2.3219 0.0000
3 ENSG00000187258 NPSR1 neuropeptide S receptor 1 2.0000 0.0000
4 ENSG00000206962 RNU6-74P RNA, U6 small nuclear 74, pseudogene 2.0000 0.0030
5 ENSG00000213793 ZNF888 zinc finger protein 888 2.0000 0.0000
6 ENSG00000224365 vitamin K epoxide reductase complex, subunit 1-like 1 (Vkorc1l1) pseudogene 2.0000 0.0000
7 ENSG00000225272 ribosomal protein L21 (RPL21) pseudogene 2.0000 0.0030
8 ENSG00000228501 RPL15P18 ribosomal protein L15 pseudogene 18 2.0000 0.0030
9 ENSG00000232360 novel transcript 2.0000 0.0030
10 ENSG00000240254 B4GALT4-AS1 B4GALT4 antisense RNA 1 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000171408 PDE7B phosphodiesterase 7B -1.5850 1.0000
63172 ENSG00000170522 ELOVL6 ELOVL fatty acid elongase 6 -1.5850 0.6120
63171 ENSG00000170312 CDK1 cyclin dependent kinase 1 -1.5850 0.6120
63170 ENSG00000169609 C15orf40 chromosome 15 open reading frame 40 -1.5850 1.0000
63169 ENSG00000169188 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 -1.5850 1.0000
63168 ENSG00000168116 KIAA1586 KIAA1586 -1.5850 1.0000
63167 ENSG00000167754 KLK5 kallikrein related peptidase 5 -1.5850 0.0397
63166 ENSG00000166321 NUDT13 nudix hydrolase 13 -1.5850 1.0000
63165 ENSG00000166164 BRD7 bromodomain containing 7 -1.5850 0.6120
63164 ENSG00000165583 SSX5 SSX family member 5 -1.5850 0.2443

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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