Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773707

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773707


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M334Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223970 pseudogene similar to part of ribosome binding protein 1 homolog 180kDa (dog) RRBP1 2.8074 0.0000
2 ENSG00000251614 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 2.8074 0.0000
3 ENSG00000233605 LINC01851 long intergenic non-protein coding RNA 1851 2.5850 0.0000
4 ENSG00000239793 ribosomal protein S21 (RPS21) pseudogene 2.5382 0.0000
5 ENSG00000109471 IL2 interleukin 2 2.3219 0.0001
6 ENSG00000200028 RNA5SP98 RNA, 5S ribosomal pseudogene 98 2.3219 0.0000
7 ENSG00000220581 VN1R12P vomeronasal 1 receptor 12, pseudogene 2.3219 0.0000
8 ENSG00000226939 novel transcript 2.3219 0.0001
9 ENSG00000229919 ELOCP3 elongin C pseudogene 3 2.3219 0.0001
10 ENSG00000276514 NA 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000263892 MIR4667 microRNA 4667 -2.1276 0.0000
63172 ENSG00000270252 IGKV3OR2-5 immunoglobulin kappa variable 3/OR2-5 (pseudogene) -2.1274 0.0083
63171 ENSG00000224875 EML4-AS1 EML4 antisense RNA 1 -2.1267 0.0000
63170 ENSG00000254254 novel transcript -2.1266 0.0000
63169 ENSG00000215474 SKOR2 SKI family transcriptional corepressor 2 -2.1266 0.0000
63168 ENSG00000013293 SLC7A14 solute carrier family 7 member 14 -2.1266 0.0000
63167 ENSG00000260011 novel transcript -2.1264 0.0000
63166 ENSG00000165186 PTCHD1 patched domain containing 1 -2.1260 0.0000
63165 ENSG00000237040 DPH3P2 diphthamide biosynthesis 3 pseudogene 2 -2.1258 0.1593
63164 ENSG00000155090 KLF10 Kruppel like factor 10 -2.1256 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...