Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773708

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773708


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M335Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207299 NA 2.8074 0.0000
2 ENSG00000230551 novel transcript 2.8074 0.0000
3 ENSG00000234173 novel transcript, antisense to PCDH15 2.8074 0.0000
4 ENSG00000258387 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.8074 0.0000
5 ENSG00000270857 ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene 2.8074 0.0000
6 ENSG00000223460 GAPDHP69 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 2.6304 0.0000
7 ENSG00000225406 ELF2P4 ELF2 pseudogene 4 2.5850 0.0000
8 ENSG00000241815 retinoblastoma binding protein 4 (RBBP4) pseudogene 2.5850 0.0001
9 ENSG00000267039 novel transcript, antisense to KIAA1328 2.3900 0.0000
10 ENSG00000256193 LINC00507 long intergenic non-protein coding RNA 507 2.3380 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000206679 Y RNA -2.1525 0.0000
63172 ENSG00000159399 HK2 hexokinase 2 -2.1525 0.0000
63171 ENSG00000196660 SLC30A10 solute carrier family 30 member 10 -2.1521 0.0000
63170 ENSG00000261595 novel transcript, antisense to PPM1J -2.1518 0.0000
63169 ENSG00000179862 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 -2.1517 0.0000
63168 ENSG00000251951 RN7SKP34 RN7SK pseudogene 34 -2.1511 0.8474
63167 ENSG00000149809 TM7SF2 transmembrane 7 superfamily member 2 -2.1503 0.0000
63166 ENSG00000164112 TMEM155 transmembrane protein 155 -2.1502 0.0000
63165 ENSG00000130881 LRP3 LDL receptor related protein 3 -2.1498 0.0000
63164 ENSG00000259080 novel transcript -2.1494 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...