Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773709

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773709


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M336Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212611 Small nucleolar RNA SNORD30 2.5850 0.0000
2 ENSG00000227945 PTPRK-AS1 PTPRK antisense RNA 1 2.5850 0.0000
3 ENSG00000253582 novel transcript 2.5850 0.0000
4 ENSG00000248574 ADAM20P2 ADAM metallopeptidase domain 20 pseudogene 2 2.3850 0.0000
5 ENSG00000216824 ZNF736P10Y zinc finger protein 736 pseudogene 10, Y-linked 2.3219 0.0000
6 ENSG00000226230 ubiquitin-fold modifier conjugating enzyme 1 (UFC1) pseudogene 2.3219 0.0001
8 ENSG00000238357 RNU7-148P RNA, U7 small nuclear 148 pseudogene 2.3219 0.0000
9 ENSG00000250213 COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) (COX17) pseudogene 2.3219 0.0001
10 ENSG00000263581 MIR548X2 microRNA 548x-2 2.3219 0.0000
63164 ENSG00000266951 novel transcript -1.9981 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000167825 OR5I1 olfactory receptor family 5 subfamily I member 1 -2.0000 1.0000
63172 ENSG00000150540 HNMT histamine N-methyltransferase -2.0000 0.2597
63171 ENSG00000145384 FABP2 fatty acid binding protein 2 -2.0000 1.0000
63170 ENSG00000064989 CALCRL calcitonin receptor like receptor -2.0000 1.0000
63169 ENSG00000168453 HR HR lysine demethylase and nuclear receptor corepressor -1.9995 0.0000
63168 ENSG00000215472 RPL17-C18orf32 RPL17-C18orf32 readthrough -1.9993 0.0000
63167 ENSG00000223960 CHROMR cholesterol induced regulator of metabolism RNA -1.9986 0.0000
63166 ENSG00000225556 C2CD4D C2 calcium dependent domain containing 4D -1.9986 0.0000
63165 ENSG00000238181 AHCYP2 adenosylhomocysteinase pseudogene 2 -1.9983 0.0000
63164 ENSG00000266951 novel transcript -1.9981 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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