Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773710

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773710


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M337Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187626 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 2.5850 0.0000
2 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 2.3219 0.0003
3 ENSG00000220110 ribosomal protein L21 (RPL21) pseudogene 2.3219 0.0000
4 ENSG00000200796 RNU6-753P RNA, U6 small nuclear 753, pseudogene 2.0000 0.0022
5 ENSG00000232809 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 2.0000 0.0022
6 ENSG00000235535 TRDN-AS1 TRDN antisense RNA 1 2.0000 0.0022
7 ENSG00000258580 novel transcript, antisense to AKAP6 2.0000 0.0022
8 ENSG00000204253 HNRNPCP2 heterogeneous nuclear ribonucleoprotein C pseudogene 2 1.9914 0.0000
9 ENSG00000201499 RNU6-312P RNA, U6 small nuclear 312, pseudogene 1.9387 0.0000
10 ENSG00000258526 novel transcript 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000166016 ABTB2 ankyrin repeat and BTB domain containing 2 -1.9574 0.0000
63172 ENSG00000201823 SNORD48 small nucleolar RNA, C/D box 48 -1.9563 0.0000
63171 ENSG00000200431 RNU4-81P RNA, U4 small nuclear 81, pseudogene -1.9561 0.0000
63170 ENSG00000254926 glycine-N-acyltransferase (GLYAT) pseudogene -1.9559 0.0009
63169 ENSG00000154359 LONRF1 LON peptidase N-terminal domain and ring finger 1 -1.9558 0.0000
63168 ENSG00000229800 ATP8A2P2 ATPase phospholipid transporting 8A2 pseudogene 2 -1.9552 0.0000
63167 ENSG00000252211 RNA5SP473 RNA, 5S ribosomal pseudogene 473 -1.9551 0.0000
63166 ENSG00000137561 TTPA alpha tocopherol transfer protein -1.9547 0.0000
63165 ENSG00000125703 ATG4C autophagy related 4C cysteine peptidase -1.9546 0.0000
63164 ENSG00000233246 PHC2-AS1 PHC2 antisense RNA 1 -1.9545 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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