Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773711

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773711


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M338Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000221840 OR4A5 olfactory receptor family 4 subfamily A member 5 2.5382 0.0000
2 ENSG00000230584 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 2.4534 0.0000
3 ENSG00000201860 Y RNA 2.3219 0.0002
4 ENSG00000232159 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 2.3219 0.0002
5 ENSG00000251844 NA 2.3219 0.0002
6 ENSG00000254832 OR4A40P olfactory receptor family 4 subfamily A member 40 pseudogene 2.3219 0.0002
7 ENSG00000272750 novel transcript, antisense to MIA3 2.1377 0.0000
8 ENSG00000237314 RPL12P39 ribosomal protein L12 pseudogene 39 2.0323 0.0000
9 ENSG00000265499 MIR3156-2 microRNA 3156-2 2.0306 0.0000
10 ENSG00000172572 PDE3A phosphodiesterase 3A 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000242593 novel transcript -2.0532 0.0008
63172 ENSG00000226309 SMARCE1P2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 2 -2.0531 0.0009
63171 ENSG00000155760 FZD7 frizzled class receptor 7 -2.0530 0.0000
63170 ENSG00000276609 NA -2.0529 0.0000
63169 ENSG00000144224 UBXN4 UBX domain protein 4 -2.0528 0.0000
63168 ENSG00000176273 SLC35G1 solute carrier family 35 member G1 -2.0526 0.0000
63167 ENSG00000067064 IDI1 isopentenyl-diphosphate delta isomerase 1 -2.0525 0.0000
63166 ENSG00000115884 SDC1 syndecan 1 -2.0522 0.0000
63165 ENSG00000224269 novel transcript -2.0519 0.0000
63164 ENSG00000143001 TMEM61 transmembrane protein 61 -2.0518 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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