Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773712

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773712


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M339Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224962 PSAT1P4 phosphoserine aminotransferase 1 pseudogene 4 2.3219 0.0003
2 ENSG00000278072 NA 2.3219 0.0003
3 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.1610 0.0000
4 ENSG00000139330 KERA keratocan 2.0000 0.0022
5 ENSG00000213285 RPL23AP45 ribosomal protein L23a pseudogene 45 2.0000 0.0000
6 ENSG00000217874 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene 2.0000 0.0022
7 ENSG00000222394 Y RNA 2.0000 0.0000
8 ENSG00000233589 novel transcript 2.0000 0.0000
9 ENSG00000234052 LINC01673 long intergenic non-protein coding RNA 1673 2.0000 0.0022
10 ENSG00000249052 novel transcript 2.0000 0.0022

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000125285 SOX21 SRY-box transcription factor 21 -1.9749 0.0000
63172 ENSG00000265766 CXADRP3 CXADR pseudogene 3 -1.9746 0.0000
63171 ENSG00000249504 PCDHA14 protocadherin alpha 14 pseudogene -1.9742 0.0000
63170 ENSG00000249604 novel transcript -1.9742 0.0000
63169 ENSG00000228300 FAM174C family with sequence similarity 174 member C -1.9741 0.0000
63168 ENSG00000283761 novel protein -1.9741 0.0020
63167 ENSG00000283973 novel transcript -1.9734 0.0000
63166 ENSG00000230314 ELOVL2-AS1 ELOVL2 antisense RNA 1 -1.9733 0.0000
63165 ENSG00000162415 ZSWIM5 zinc finger SWIM-type containing 5 -1.9729 0.0000
63164 ENSG00000270522 novel transcript -1.9726 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...