Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773713

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773713


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M340Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224599 BMS1P12 BMS1 pseudogene 12 2.5850 0.0000
2 ENSG00000224935 novel transcript 2.1610 0.0000
3 ENSG00000256564 novel transcript 2.0763 0.0000
4 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.0000 0.0019
5 ENSG00000227138 pseudogene similar to part of ribosomal protein S3A RPS3A 1.6887 0.0000
6 ENSG00000249910 TRIM51CP tripartite motif-containing 51C, pseudogene 1.6610 0.0000
7 ENSG00000188993 LRRC66 leucine rich repeat containing 66 1.6473 0.0000
8 ENSG00000253523 novel transcript 1.6356 0.0000
9 ENSG00000180673 EXOC5P1 exocyst complex component 5 pseudogene 1 1.5850 0.0152
10 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 1.5850 0.0152

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000281852 LINC00891 long intergenic non-protein coding RNA 891 -1.8870 0.5014
63172 ENSG00000148154 UGCG UDP-glucose ceramide glucosyltransferase -1.8866 0.0000
63170 ENSG00000200213 RNU6-992P RNA, U6 small nuclear 992, pseudogene -1.8862 0.0000
63167 ENSG00000279172 TEC -1.8855 0.0000
63166 ENSG00000205138 SDHAF1 succinate dehydrogenase complex assembly factor 1 -1.8854 0.0000
63165 ENSG00000160013 PTGIR prostaglandin I2 receptor -1.8853 0.0000
63164 ENSG00000181619 GPR135 G protein-coupled receptor 135 -1.8852 0.0000
10 ENSG00000198967 OR10Z1 olfactory receptor family 10 subfamily Z member 1 1.5850 0.0152
9 ENSG00000180673 EXOC5P1 exocyst complex component 5 pseudogene 1 1.5850 0.0152
8 ENSG00000253523 novel transcript 1.6356 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...