Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773714

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773714


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M341Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229175 LINC00382 long intergenic non-protein coding RNA 382 2.7459 0.0000
2 ENSG00000233349 LINC00333 long intergenic non-protein coding RNA 333 2.5850 0.0000
3 ENSG00000273919 novel transcript 2.5850 0.0000
4 ENSG00000242118 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene 2.3219 0.0002
5 ENSG00000250827 MFSD4BP1 major facilitator superfamily domain containing 4B pseudogene 1 2.3219 0.0002
6 ENSG00000254848 OR5BN1P olfactory receptor family 5 subfamily BN member 1 pseudogene 2.3219 0.0002
7 ENSG00000279703 TEC 2.3219 0.0002
8 ENSG00000232035 novel transcript 2.1114 0.0000
9 ENSG00000248553 OR52H2P olfactory receptor family 52 subfamily H member 2 pseudogene 2.0566 0.0000
10 ENSG00000123447 TYRL tyrosinase like (pseudogene) 2.0000 0.0017

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000162576 MXRA8 matrix remodeling associated 8 -2.0623 0.0000
63172 ENSG00000261642 novel transcript -2.0619 0.0000
63171 ENSG00000239143 Y RNA -2.0618 0.0000
63170 ENSG00000163251 FZD5 frizzled class receptor 5 -2.0616 0.0000
63169 ENSG00000266983 novel transcript, antisense to RFX2 -2.0612 0.0000
63168 ENSG00000260267 novel transcript, antisense to ARMC5 -2.0612 0.0000
63167 ENSG00000179698 WDR97 WD repeat domain 97 -2.0609 0.0000
63166 ENSG00000263813 MIR3679 microRNA 3679 -2.0609 0.0000
63165 ENSG00000240041 IGHJ4 immunoglobulin heavy joining 4 -2.0607 0.0000
63164 ENSG00000153012 LGI2 leucine rich repeat LGI family member 2 -2.0602 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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