Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773715

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773715


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M342Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250315 ubiquitin-conjugating enzyme E2D 4 (putative) (UBE2D4) pseudogene 3.1699 0.0000
2 ENSG00000253581 developmental pluripotency associated 3 (DPPA3) pseudogene 2.5850 0.0000
3 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 2.3219 0.0002
4 ENSG00000222210 RN7SKP65 RN7SK pseudogene 65 2.3219 0.0002
5 ENSG00000233676 FDPSP6 farnesyl diphosphate synthase pseudogene 6 2.3219 0.0000
6 ENSG00000257845 LINC02294 long intergenic non-protein coding RNA 2294 2.3219 0.0000
7 ENSG00000277515 RN7SL495P RNA, 7SL, cytoplasmic 495, pseudogene 2.3219 0.0002
8 ENSG00000226338 pseudogene similar to part of phospholipase C, gamma 1 PLCG1 2.2925 0.0000
9 ENSG00000230945 LINC01507 long intergenic non-protein coding RNA 1507 2.0566 0.0000
63164 ENSG00000230471 novel transcript -1.9286 0.0120

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000200624 RNA5S6 RNA, 5S ribosomal 6 -1.9326 0.0000
63172 ENSG00000254966 novel transcript -1.9321 0.0000
63171 ENSG00000233685 OR6L1P olfactory receptor family 6 subfamily L member 1 pseudogene -1.9313 0.0000
63170 ENSG00000139725 RHOF ras homolog family member F, filopodia associated -1.9307 0.0000
63169 ENSG00000182591 KRTAP11-1 keratin associated protein 11-1 -1.9307 0.0695
63168 ENSG00000248817 PMPCAP1 PMPCA pseudogene 1 -1.9303 0.0000
63167 ENSG00000178372 CALML5 calmodulin like 5 -1.9303 0.0000
63166 ENSG00000173705 SUSD5 sushi domain containing 5 -1.9302 0.0000
63165 ENSG00000257935 LHX5-AS1 LHX5 antisense RNA 1 -1.9301 0.0000
63164 ENSG00000230471 novel transcript -1.9286 0.0120

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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