Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773716

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773716


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M343Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212100 MIR764 microRNA 764 2.5850 0.0000
2 ENSG00000227279 novel transcript, antisense to CDH2 2.5850 0.0000
3 ENSG00000232149 FERP1 FER tyrosine kinase pseudogene 1 2.1454 0.0000
4 ENSG00000199035 MIR103A1 microRNA 103a-1 2.0000 0.0024
5 ENSG00000200350 RNU6-1285P RNA, U6 small nuclear 1285, pseudogene 2.0000 0.0000
6 ENSG00000207428 RNU6-95P RNA, U6 small nuclear 95, pseudogene 2.0000 0.0024
7 ENSG00000219736 nucleoporin 50kDa (NUP50) pseudogene 2.0000 0.0024
8 ENSG00000224440 CXorf51A chromosome X open reading frame 51A 2.0000 0.0000
9 ENSG00000230320 BEND7P1 BEN domain containing 7 pseudogene 1 2.0000 0.0000
10 ENSG00000235699 CXorf51B chromosome X open reading frame 51B 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000178502 KLHL11 kelch like family member 11 -1.8742 0.0000
63172 ENSG00000237371 novel transcript -1.8741 0.0000
63171 ENSG00000230869 AGAP10P ArfGAP with GTPase domain, ankyrin repeat and PH domain 10, pseudogene -1.8739 0.0000
63170 ENSG00000256358 RPL31P57 ribosomal protein L31 pseudogene 57 -1.8735 0.0000
63169 ENSG00000214330 ABCD1P5 ATP binding cassette subfamily D member 1 pseudogene 5 -1.8730 0.3796
63168 ENSG00000227019 OR7E101P olfactory receptor family 7 subfamily E member 101 pseudogene -1.8729 0.0014
63167 ENSG00000281333 novel transcript, antisense to KITLG -1.8725 0.0000
63166 ENSG00000113319 RASGRF2 Ras protein specific guanine nucleotide releasing factor 2 -1.8725 0.0000
63165 ENSG00000234571 H2BP2 H2B histone pseudogene 2 -1.8724 0.0000
63164 ENSG00000250922 ATP5F1EP1 ATP synthase F1 subunit epsilon pseudogene 1 -1.8724 0.1057

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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