Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773717

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773717


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M344Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207515 RNU6-555P RNA, U6 small nuclear 555, pseudogene 2.3219 0.0002
2 ENSG00000236880 ribosomal protein (RPS26) pseudogene 2.3219 0.0002
3 ENSG00000243671 RN7SL761P RNA, 7SL, cytoplasmic 761, pseudogene 2.3219 0.0002
4 ENSG00000242922 RPL21P104 ribosomal protein L21 pseudogene 104 2.0000 0.0019
5 ENSG00000259113 novel transcript 2.0000 0.0019
6 ENSG00000270528 FAM133EP family with sequence similarity 133 member E, pseudogene 2.0000 0.0019
7 ENSG00000237447 CDC27P2 cell division cycle 27 pseudogene 2 1.9534 0.0000
8 ENSG00000254351 ARL2BPP5 ADP ribosylation factor like GTPase 2 binding protein pseudogene 5 1.7765 0.0000
9 ENSG00000222432 Y RNA 1.6864 0.0000
10 ENSG00000187653 TMSB4XP8 TMSB4X pseudogene 8 1.6258 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000145990 GFOD1 glucose-fructose oxidoreductase domain containing 1 -1.9238 0.0000
63172 ENSG00000237732 CT75 cancer/testis associated transcript 75 -1.9236 0.0000
63171 ENSG00000141161 UNC45B unc-45 myosin chaperone B -1.9233 0.0000
63170 ENSG00000228223 HCG11 HLA complex group 11 -1.9231 0.0000
63169 ENSG00000223475 novel transcript -1.9227 0.0000
63168 ENSG00000228433 OR7E23P olfactory receptor family 7 subfamily E member 23 pseudogene -1.9226 0.0000
63167 ENSG00000139318 DUSP6 dual specificity phosphatase 6 -1.9225 0.0000
63166 ENSG00000231566 LINC02595 long intergenic non-protein coding RNA 2595 -1.9224 0.0000
63165 ENSG00000151229 SLC2A13 solute carrier family 2 member 13 -1.9224 0.0000
63164 ENSG00000267704 FRG2LP FSHD region gene 2 family member L, pseudogene -1.9217 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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