Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773718

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773718


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M345Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213430 HSPD1P1 heat shock protein family D (Hsp60) member 1 pseudogene 1 2.5850 0.0000
2 ENSG00000224035 SFPQP1 splicing factor proline and glutamine rich pseudogene 1 2.5850 0.0001
3 ENSG00000241782 ribosomal protein L21 (RPL21) pseudogene 2.5850 0.0000
4 ENSG00000254459 novel transcript, antisense to AAMDC 2.5850 0.0000
5 ENSG00000255449 novel transcript, antisense to AAMDC 2.5850 0.0000
6 ENSG00000172208 OR4X2 olfactory receptor family 4 subfamily X member 2 2.3219 0.0000
7 ENSG00000222693 RN7SKP120 RN7SK pseudogene 120 2.3219 0.0000
8 ENSG00000223169 RNA5SP209 RNA, 5S ribosomal pseudogene 209 2.3219 0.0004
9 ENSG00000227611 LINC01074 long intergenic non-protein coding RNA 1074 2.3219 0.0000
10 ENSG00000229307 LINC00459 long intergenic non-protein coding RNA 459 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000107807 TLX1 T cell leukemia homeobox 1 -1.8887 0.0000
63172 ENSG00000112309 B3GAT2 beta-1,3-glucuronyltransferase 2 -1.8885 0.0000
63171 ENSG00000201376 Small nucleolar RNA SNORA70 -1.8884 0.0000
63170 ENSG00000138759 FRAS1 Fraser extracellular matrix complex subunit 1 -1.8879 0.0000
63169 ENSG00000215644 GCGR glucagon receptor -1.8878 0.0000
63168 ENSG00000088930 XRN2 5'-3' exoribonuclease 2 -1.8876 0.0147
63167 ENSG00000188051 TMEM221 transmembrane protein 221 -1.8875 0.0000
63166 ENSG00000164610 RP9 RP9 pre-mRNA splicing factor -1.8873 0.0000
63165 ENSG00000198354 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 -1.8872 0.0000
63164 ENSG00000223138 RNA5SP450 RNA, 5S ribosomal pseudogene 450 -1.8868 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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