Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773720

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773720


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M347Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000233107 SUCLA2P2 SUCLA2 pseudogene 2 2.5480 0.0000
2 ENSG00000244031 RPS3AP17 RPS3A pseudogene 17 2.3219 0.0001
3 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.0000 0.0013
4 ENSG00000199977 Small nucleolar RNA SNORA73 family 2.0000 0.0013
5 ENSG00000200385 NA 2.0000 0.0013
6 ENSG00000212324 RNU6-129P RNA, U6 small nuclear 129, pseudogene 2.0000 0.0013
7 ENSG00000214285 NPS neuropeptide S 2.0000 0.0000
8 ENSG00000230116 RPS3AP11 RPS3A pseudogene 11 2.0000 0.0000
9 ENSG00000234560 OR10G8 olfactory receptor family 10 subfamily G member 8 2.0000 0.0013
10 ENSG00000235197 ZNF33CP zinc finger protein 33C, pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000238280 novel transcript -1.6404 0.0000
63172 ENSG00000272716 novel transcript -1.6403 0.0679
63171 ENSG00000152683 SLC30A6 solute carrier family 30 member 6 -1.6403 0.0679
63170 ENSG00000047644 WWC3 WWC family member 3 -1.6401 0.0000
63169 ENSG00000232515 Ig lambda chain V-I region pseudogene -1.6394 0.1588
63168 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 -1.6394 0.0190
63167 ENSG00000201588 RNA5S2 RNA, 5S ribosomal 2 -1.6394 0.0130
63166 ENSG00000200381 RNA5S4 RNA, 5S ribosomal 4 -1.6394 0.0130
63165 ENSG00000199352 RNA5S1 RNA, 5S ribosomal 1 -1.6394 0.0130
63164 ENSG00000199337 RNA5S3 RNA, 5S ribosomal 3 -1.6394 0.0130

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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