Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773721

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773721


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M348Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000239473 RPL7P38 ribosomal protein L7 pseudogene 38 2.5850 0.0000
2 ENSG00000207145 SNORA18 small nucleolar RNA, H/ACA box 18 2.3219 0.0000
3 ENSG00000239195 SNORD5 small nucleolar RNA, C/D box 5 2.3219 0.0000
4 ENSG00000284458 MIR1304 microRNA 1304 2.3219 0.0000
5 ENSG00000202431 RNU6-438P RNA, U6 small nuclear 438, pseudogene 2.0000 0.0023
6 ENSG00000242186 pseudogene similar to part of taxol resistance associated gene 3 2.0000 0.0023
8 ENSG00000254252 RPL7P20 ribosomal protein L7 pseudogene 20 1.7233 0.0000
9 ENSG00000279511 TEC 1.7233 0.0000
10 ENSG00000206598 RNU6-1286P RNA, U6 small nuclear 1286, pseudogene 1.5850 0.0173
63164 ENSG00000165644 COMTD1 catechol-O-methyltransferase domain containing 1 -1.8045 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000137040 RANBP6 RAN binding protein 6 -1.8071 0.0000
63172 ENSG00000171451 DSEL dermatan sulfate epimerase like -1.8065 0.0000
63171 ENSG00000161610 HCRT hypocretin neuropeptide precursor -1.8065 0.0000
63170 ENSG00000255653 lysine (K)-specific demethylase 4D (KDM4D) pseudogene -1.8063 0.1626
63169 ENSG00000230268 SSU72P8 SSU72 pseudogene 8 -1.8063 0.1626
63168 ENSG00000260021 novel transcript, antisense to a novel transcript -1.8062 0.0000
63167 ENSG00000228288 PCAT6 prostate cancer associated transcript 6 -1.8062 0.0000
63166 ENSG00000196993 NPIPB9 nuclear pore complex interacting protein family member B9 -1.8056 0.0000
63165 ENSG00000137727 ARHGAP20 Rho GTPase activating protein 20 -1.8050 0.0000
63164 ENSG00000165644 COMTD1 catechol-O-methyltransferase domain containing 1 -1.8045 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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