Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773722

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773722


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M349Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000247877 novel transcript 2.3219 0.0004
2 ENSG00000226341 MTCYBP39 MT-CYB pseudogene 39 2.0000 0.0000
3 ENSG00000234145 NAP1L4P3 nucleosome assembly protein 1 like 4 pseudogene 3 2.0000 0.0027
5 ENSG00000255531 NDUFS5P6 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 6 2.0000 0.0000
6 ENSG00000282993 TEC 2.0000 0.0027
7 ENSG00000248237 protein phosphatase 2 (formerly 2A), regulatory subunit B, gamma isoform (PPP2R2C) pseudogene 1.7233 0.0000
8 ENSG00000169488 OR4K15 olfactory receptor family 4 subfamily K member 15 1.5850 0.0004
9 ENSG00000181819 KCTD9P2 potassium channel tetramerization domain containing 9 pseudogene 2 1.5850 0.0194
10 ENSG00000201957 NA 1.5850 0.0000
63164 ENSG00000259551 novel transcript -1.7273 0.0260

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000141161 UNC45B unc-45 myosin chaperone B -1.7294 0.0000
63172 ENSG00000253910 PCDHGB2 protocadherin gamma subfamily B, 2 -1.7292 0.0000
63171 ENSG00000254027 novel transcript -1.7292 0.0000
63170 ENSG00000181418 DDN dendrin -1.7284 0.0000
63169 ENSG00000273965 novel transcript, antisense TADA2A -1.7283 0.0000
63168 ENSG00000231929 HMGB3P31 high mobility group box 3 pseudogene 31 -1.7282 0.0000
63167 ENSG00000160959 LRRC14 leucine rich repeat containing 14 -1.7279 0.0000
63166 ENSG00000118503 TNFAIP3 TNF alpha induced protein 3 -1.7277 0.0000
63165 ENSG00000135439 AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 -1.7275 0.0000
63164 ENSG00000259551 novel transcript -1.7273 0.0260

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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