Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773723

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773723


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M350Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000204020 LIPN lipase family member N 2.5850 0.0000
2 ENSG00000254650 MTCYBP41 MT-CYB pseudogene 41 2.3219 0.0000
3 ENSG00000255022 mitochondrially encoded NADH dehydrogenase 6 (MT-ND6) pseudogene 2.3219 0.0000
4 ENSG00000279793 novel transcript 2.3219 0.0000
5 ENSG00000227847 PPIAP93 PPIA pseudogene 93 2.0763 0.0000
6 ENSG00000230213 OR8V1P olfactory receptor family 8 subfamily V member 1 pseudogene 2.0000 0.0008
7 ENSG00000232139 LINC00867 long intergenic non-protein coding RNA 867 2.0000 0.0008
8 ENSG00000234538 ZNF114P1 zinc finger protein 114 pseudogene 1 2.0000 0.0008
9 ENSG00000249351 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 (AGAP1) pseudogene 2.0000 0.0008
10 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.0000 0.0008

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000260427 AGGF1P9 angiogenic factor with G-patch and FHA domains 1 pseudogene 9 -1.8617 0.3915
63171 ENSG00000232568 RPL23AP35 ribosomal protein L23a pseudogene 35 -1.8617 1.0000
63170 ENSG00000227852 RPS29P17 ribosomal protein S29 pseudogene 17 -1.8617 0.3915
63169 ENSG00000223152 RNU4-88P RNA, U4 small nuclear 88, pseudogene -1.8617 1.0000
63168 ENSG00000186572 DEFB107A defensin beta 107A -1.8617 1.0000
63167 ENSG00000124216 SNAI1 snail family transcriptional repressor 1 -1.8615 0.0000
63166 ENSG00000228957 pseudogene similar to part of ral guanine nucleotide dissociation stimulator RALGDS -1.8613 0.0000
63165 ENSG00000226570 natural cytotoxicity triggering receptor 1 (NCR1) pseudogene -1.8613 0.0000
63164 ENSG00000242073 postmeiotic segregation increased 2-like 3 (PMS2L3) pseudogene -1.8608 0.0000
10 ENSG00000250847 Rho GTPase activating protein 5 (ARHGAP5) pseudogene 2.0000 0.0008

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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