Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773724

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773724


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M351Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230790 novel transcript 5.0414 0.0000
2 ENSG00000132017 DCAF15 DDB1 and CUL4 associated factor 15 4.9542 0.0000
3 ENSG00000108773 KAT2A lysine acetyltransferase 2A 3.9258 0.0000
4 ENSG00000260325 HSPB9 heat shock protein family B (small) member 9 3.9258 0.0000
5 ENSG00000013810 TACC3 transforming acidic coiled-coil containing protein 3 3.8767 0.0000
6 ENSG00000131379 C3orf20 chromosome 3 open reading frame 20 3.8571 0.0000
7 ENSG00000235139 novel transcript 3.8108 0.0000
8 ENSG00000179270 PCARE photoreceptor cilium actin regulator 3.8074 0.0000
9 ENSG00000225117 ARSDP1 arylsulfatase D pseudogene 1 3.7405 0.0000
10 ENSG00000262248 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene 3.7067 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000258313 novel transcript -2.0738 0.0000
63172 ENSG00000265287 novel transcript, antisense to novel protein -2.0728 0.0000
63170 ENSG00000076924 XAB2 XPA binding protein 2 -2.0724 0.0000
63169 ENSG00000227195 MIR663AHG MIR663A host gene -2.0716 0.0000
63168 ENSG00000264250 RN7SL835P RNA, 7SL, cytoplasmic 835, pseudogene -2.0709 0.0000
63167 ENSG00000189227 C15orf61 chromosome 15 open reading frame 61 -2.0681 0.0000
63166 ENSG00000270640 novel transcript, sense intronic to FOSL2 -2.0672 0.0000
63165 ENSG00000229951 uncharacterized protein FLJ31356 -2.0672 0.0000
63164 ENSG00000075426 FOSL2 FOS like 2, AP-1 transcription factor subunit -2.0672 0.0000
10 ENSG00000262248 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor pseudogene 3.7067 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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