Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773725

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773725


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M352Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244025 KRTAP19-3 keratin associated protein 19-3 2.5850 0.0000
2 ENSG00000255565 novel transcript 2.5850 0.0000
3 ENSG00000255380 novel pseudogene containing a Zinc finger, C2H2 type domain 2.3219 0.0003
4 ENSG00000134545 KLRC1 killer cell lectin like receptor C1 2.0000 0.0024
5 ENSG00000206923 RNU6-432P RNA, U6 small nuclear 432, pseudogene 2.0000 0.0024
6 ENSG00000224104 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) (SUMO2) pseudogene 2.0000 0.0024
7 ENSG00000226625 RBM17P1 RNA binding motif protein 17 pseudogene 1 2.0000 0.0000
8 ENSG00000226640 novel transcript 2.0000 0.0024
9 ENSG00000227016 LINC02796 long intergenic non-protein coding RNA 2796 2.0000 0.0024
10 ENSG00000241648 CADM2-AS2 CADM2 antisense RNA 2 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000265393 novel transcript, antisense to RECQL4 -1.7569 0.0000
63172 ENSG00000171533 MAP6 microtubule associated protein 6 -1.7568 0.0000
63171 ENSG00000279030 novel transcript -1.7564 0.0000
63170 ENSG00000183154 novel transcript, antisense to ERLIN2 -1.7561 0.0000
63169 ENSG00000104324 CPQ carboxypeptidase Q -1.7560 0.0000
63168 ENSG00000202474 RNA5SP283 RNA, 5S ribosomal pseudogene 283 -1.7558 0.0000
63167 ENSG00000254941 ring finger protein 181 (RNF181) pseudogene -1.7558 0.0000
63166 ENSG00000223658 C1GALT1C1L C1GALT1 specific chaperone 1 like -1.7554 0.3487
63165 ENSG00000182487 NCF1B neutrophil cytosolic factor 1B pseudogene -1.7553 0.0001
63164 ENSG00000207101 Y RNA -1.7551 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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