Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773726

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773726


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M353Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206732 RNU6-936P RNA, U6 small nuclear 936, pseudogene 2.0000 0.0026
2 ENSG00000227418 PCGEM1 PCGEM1 prostate-specific transcript 2.0000 0.0026
3 ENSG00000236047 RPL13AP12 ribosomal protein L13a pseudogene 12 2.0000 0.0026
4 ENSG00000239001 RNU6-420P RNA, U6 small nuclear 420, pseudogene 2.0000 0.0026
5 ENSG00000271934 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene 1.9308 0.0000
6 ENSG00000230198 RPL37P4 ribosomal protein L37 pseudogene 4 1.8617 0.0000
7 ENSG00000175749 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 1.5850 0.0191
8 ENSG00000201311 Y RNA 1.5850 0.0191
9 ENSG00000212952 novel pseudogene 1.5850 0.0191
10 ENSG00000219867 ras homologue gene family pseudogene 1.5850 0.0191

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272143 FGF14-AS2 FGF14 antisense RNA 2 -1.8439 0.0000
63172 ENSG00000142700 DMRTA2 DMRT like family A2 -1.8428 0.0000
63171 ENSG00000164100 NDST3 N-deacetylase and N-sulfotransferase 3 -1.8425 0.0000
63170 ENSG00000069812 HES2 hes family bHLH transcription factor 2 -1.8422 0.0000
63169 ENSG00000201027 RN7SKP107 RN7SK pseudogene 107 -1.8421 0.0000
63168 ENSG00000162073 PAQR4 progestin and adipoQ receptor family member 4 -1.8419 0.0000
63167 ENSG00000223953 C1QTNF5 C1q and TNF related 5 -1.8416 0.0000
63166 ENSG00000280105 TEC -1.8416 0.0000
63165 ENSG00000025708 TYMP thymidine phosphorylase -1.8414 0.0000
63164 ENSG00000225792 novel transcript -1.8411 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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