Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773727

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773727


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M354Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213542 ribosomal protein L7a (RPL7A) pseudogene 2.8074 0.0000
2 ENSG00000120235 IFNA6 interferon alpha 6 2.5850 0.0000
3 ENSG00000233464 NANOGP11 Nanog homeobox pseudogene 11 2.5850 0.0000
4 ENSG00000280336 novel transcript 2.5850 0.0000
5 ENSG00000256450 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2) pseudogene 2.5537 0.0000
6 ENSG00000255039 LINC02553 long intergenic non-protein coding RNA 2553 2.5382 0.0000
7 ENSG00000276672 novel transcript, sense intronic to RFC3 2.4466 0.0000
8 ENSG00000232647 POLR3KP1 RNA polymerase III subunit K pseudogene 1 2.3873 0.0000
9 ENSG00000181214 OR8G2P olfactory receptor family 8 subfamily G member 2 pseudogene 2.3219 0.0003
10 ENSG00000234520 heart tissue-associated transcript 17 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253104 novel transcript -2.0000 1.0000
63172 ENSG00000253038 RNU6-706P RNA, U6 small nuclear 706, pseudogene -2.0000 0.6174
63171 ENSG00000251216 novel transcript -2.0000 0.6174
63170 ENSG00000248479 novel transcript -2.0000 1.0000
63169 ENSG00000244358 novel transcript -2.0000 1.0000
63168 ENSG00000243347 LINC02045 long intergenic non-protein coding RNA 2045 -2.0000 1.0000
63167 ENSG00000242079 RN7SL318P RNA, 7SL, cytoplasmic 318, pseudogene -2.0000 0.6174
63166 ENSG00000241392 RN7SL205P RNA, 7SL, cytoplasmic 205, pseudogene -2.0000 0.3873
63165 ENSG00000241383 LINC01997 long intergenic non-protein coding RNA 1997 -2.0000 1.0000
63164 ENSG00000241168 novel transcript -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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