Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773728

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773728


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M355Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263938 novel transcript, sense intronic to PPM1E 3.3219 0.0000
2 ENSG00000237790 LINC01318 long intergenic non-protein coding RNA 1318 3.1699 0.0000
3 ENSG00000199459 Y RNA 2.8074 0.0000
4 ENSG00000199378 Y RNA 2.5850 0.0001
5 ENSG00000263872 MIR4528 microRNA 4528 2.5850 0.0000
6 ENSG00000177888 ZBTB41 zinc finger and BTB domain containing 41 2.3219 0.0004
7 ENSG00000202430 RNA5SP88 RNA, 5S ribosomal pseudogene 88 2.3219 0.0000
8 ENSG00000211802 TRAV22 T cell receptor alpha variable 22 2.3219 0.0004
9 ENSG00000211812 TRAV26-2 T cell receptor alpha variable 26-2 2.3219 0.0004
10 ENSG00000212612 RNU6-1239P RNA, U6 small nuclear 1239, pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000249362 LINC02488 long intergenic non-protein coding RNA 2488 -2.0128 0.0005
63172 ENSG00000274588 DGKK diacylglycerol kinase kappa -2.0125 0.0000
63171 ENSG00000231445 TIMM8AP1 translocase of inner mitochondrial membrane 8A pseudogene 1 -2.0123 0.0000
63170 ENSG00000284375 MIR19B1 microRNA 19b-1 -2.0121 0.0000
63169 ENSG00000283705 MIR92A1 microRNA 92a-1 -2.0121 0.0000
63168 ENSG00000101190 TCFL5 transcription factor like 5 -2.0119 0.0000
63167 ENSG00000071994 PDCD2 programmed cell death 2 -2.0113 0.0000
63166 ENSG00000198452 OR14L1P olfactory receptor family 14 subfamily L member 1 pseudogene -2.0111 0.1515
63165 ENSG00000252601 NA -2.0110 0.0641
63164 ENSG00000178074 C2orf69 chromosome 2 open reading frame 69 -2.0109 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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