Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773729

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773729


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M356Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273369 novel transcript, antisense to GUF1 2.5850 0.0000
2 ENSG00000256243 RPL7AP3 ribosomal protein L7a pseudogene 3 2.0850 0.0000
3 ENSG00000204814 novel transcript 2.0000 0.0027
4 ENSG00000231454 novel pseudogene 2.0000 0.0027
5 ENSG00000232576 ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene 2.0000 0.0027
6 ENSG00000236929 RPL35AP37 ribosomal protein L35a pseudogene 37 2.0000 0.0000
7 ENSG00000237388 OR4A47 olfactory receptor family 4 subfamily A member 47 2.0000 0.0027
8 ENSG00000250390 novel transcript 2.0000 0.0027
9 ENSG00000255215 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene 2.0000 0.0027
10 ENSG00000256892 MTRNR2L7 MT-RNR2 like 7 2.0000 0.0027

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000239383 pseudogene similar to part of chromosome 11 open reading frame2 (C11orf2) -1.7127 0.0000
63172 ENSG00000137154 RPS6 ribosomal protein S6 -1.7126 0.0000
63171 ENSG00000103363 ELOB elongin B -1.7124 0.0000
63170 ENSG00000171016 PYGO1 pygopus family PHD finger 1 -1.7118 0.0000
63169 ENSG00000271899 MIR4466 microRNA 4466 -1.7118 0.0000
63168 ENSG00000245848 CEBPA CCAAT enhancer binding protein alpha -1.7113 0.0000
63167 ENSG00000113240 CLK4 CDC like kinase 4 -1.7103 0.0000
63166 ENSG00000100300 TSPO translocator protein -1.7103 0.0000
63165 ENSG00000233608 TWIST2 twist family bHLH transcription factor 2 -1.7101 0.0000
63164 ENSG00000273172 LINC02091 long intergenic non-protein coding RNA 2091 -1.7099 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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