Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773730

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773730


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M357Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000227979 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.3219 0.0008
2 ENSG00000137080 IFNA21 interferon alpha 21 2.0000 0.0046
3 ENSG00000207750 MIR553 microRNA 553 2.0000 0.0000
4 ENSG00000224000 novel transcript 2.0000 0.0046
5 ENSG00000225222 CHCHD4P5 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 5 2.0000 0.0000
6 ENSG00000236946 HNRNPA1P70 heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 2.0000 0.0000
7 ENSG00000248877 PGBD4P4 piggyBac transposable element derived 4 pseudogene 4 2.0000 0.0046
8 ENSG00000252179 RNA5SP255 RNA, 5S ribosomal pseudogene 255 2.0000 0.0000
9 ENSG00000257781 novel transcript 2.0000 0.0046
10 ENSG00000257893 LINC02404 long intergenic non-protein coding RNA 2404 2.0000 0.0046

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000248639 UDP glucuronos...yltransferase 2 family, polypeptide B4 (UGT2B4) pseudogene -1.5820 0.1446
63172 ENSG00000238141 BRWD1-AS1 BRWD1 antisense RNA 1 -1.5816 0.0000
63171 ENSG00000273988 chromosome X open reading frame 48 (CXorf48) pseudogene -1.5804 0.0000
63170 ENSG00000232504 ST3GAL5-AS1 ST3GAL5 antisense RNA 1 (head to head) -1.5800 0.0000
63169 ENSG00000267395 DM1-AS DM1 locus antisense RNA -1.5798 0.0000
63168 ENSG00000144802 NFKBIZ NFKB inhibitor zeta -1.5797 0.0000
63167 ENSG00000104044 OCA2 OCA2 melanosomal transmembrane protein -1.5793 0.0000
63166 ENSG00000116903 EXOC8 exocyst complex component 8 -1.5782 0.0000
63165 ENSG00000235706 DICER1-AS1 DICER1 antisense RNA 1 -1.5782 0.0000
63164 ENSG00000270598 chromosome 17 open reading frame 89 (C17orf89) pseudogene -1.5778 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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