Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773731

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773731


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M358Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236191 RPS15AP25 ribosomal protein S15a pseudogene 25 2.3219 0.0005
2 ENSG00000239872 RPL35AP19 ribosomal protein L35a pseudogene 19 2.3219 0.0005
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1288 0.0000
4 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 2.0924 0.0000
5 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0074 0.0000
6 ENSG00000215089 KRT18P11 keratin 18 pseudogene 11 2.0000 0.0033
7 ENSG00000223177 RNA5SP39 RNA, 5S ribosomal pseudogene 39 2.0000 0.0033
8 ENSG00000226084 ribosomal protein L17 (RPL17) pseudogene 2.0000 0.0000
9 ENSG00000227616 procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II (P4HA2) pseudogene 2.0000 0.0033
10 ENSG00000234903 pseudogene similar to part of a tripartite motif-containing family protein 2.0000 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000241735 FABP5P3 fatty acid binding protein 5 pseudogene 3 -2.0677 0.0000
63172 ENSG00000276712 MIR7111 microRNA 7111 -2.0673 0.0000
63171 ENSG00000158604 TMED4 transmembrane p24 trafficking protein 4 -2.0672 0.0000
63170 ENSG00000272183 novel transcript, antisense to LBX2 -2.0671 0.0000
63169 ENSG00000156486 KCNS2 potassium voltage-gated channel modifier subfamily S member 2 -2.0670 0.0000
63168 ENSG00000198934 MAGEE1 MAGE family member E1 -2.0665 0.0000
63167 ENSG00000272717 novel transcript, antisense to SETD7 -2.0660 0.0000
63166 ENSG00000283317 novel transcript -2.0659 0.0000
63165 ENSG00000149948 HMGA2 high mobility group AT-hook 2 -2.0658 0.0000
63164 ENSG00000238290 novel transcript -2.0657 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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