Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773732

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773732


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M359Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254437 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.8074 0.0000
2 ENSG00000223269 RN7SKP53 RN7SK pseudogene 53 2.5850 0.0000
3 ENSG00000236594 RPS27AP14 RPS27A pseudogene 14 2.5850 0.0000
4 ENSG00000255167 novel transcript 2.5850 0.0000
5 ENSG00000278857 IGKV1D-12 immunoglobulin kappa variable 1D-12 2.5850 0.0000
6 ENSG00000278980 novel transcript 2.5850 0.0000
7 ENSG00000110848 CD69 CD69 molecule 2.3219 0.0004
8 ENSG00000280279 LINC02887 long intergenic non-protein coding RNA 2887 2.3219 0.0004
9 ENSG00000238724 NA 2.1308 0.0000
10 ENSG00000187653 TMSB4XP8 TMSB4X pseudogene 8 2.0847 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000124535 WRNIP1 WRN helicase interacting protein 1 -1.9990 0.0000
63172 ENSG00000203684 IBA57-DT IBA57 divergent transcript -1.9990 0.0000
63171 ENSG00000188042 ARL4C ADP ribosylation factor like GTPase 4C -1.9981 0.0000
63170 ENSG00000245748 novel transcript, antisense to TBC1D14 and TADA2B -1.9981 0.0000
63169 ENSG00000160973 FOXH1 forkhead box H1 -1.9977 0.0000
63168 ENSG00000269427 novel transcript, antisense C19orf42 -1.9973 0.0000
63167 ENSG00000104951 IL4I1 interleukin 4 induced 1 -1.9971 0.0000
63166 ENSG00000256937 KRT17P8 keratin 17 pseudogene 8 -1.9970 0.0000
63165 ENSG00000198680 TUSC1 tumor suppressor candidate 1 -1.9965 0.0000
63164 ENSG00000272192 novel transcript -1.9964 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...