Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773733

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773733


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M360Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.5850 0.0001
2 ENSG00000229907 DEFB108A defensin beta 108A 2.3219 0.0000
3 ENSG00000250017 tigger transposable element derived 1 (TIGD1) pseudogene 2.3219 0.0006
4 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.2036 0.0000
5 ENSG00000276810 ribosomal protein L18a (RPL18A) pseudogene 2.1610 0.0000
6 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 2.1507 0.0000
7 ENSG00000249921 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (GNB2L1) pseudogene 2.0850 0.0000
8 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0278 0.0000
9 ENSG00000198398 TMEM207 transmembrane protein 207 2.0000 0.0040
10 ENSG00000200355 Small nucleolar RNA SNORA72 2.0000 0.0040

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000244953 novel transcript -1.9866 0.0000
63172 ENSG00000203684 IBA57-DT IBA57 divergent transcript -1.9863 0.0000
63171 ENSG00000272502 novel transcript -1.9862 0.0000
63170 ENSG00000165244 ZNF367 zinc finger protein 367 -1.9861 0.0000
63169 ENSG00000267102 RAB32, member RAS oncogene family (RAB32) pseudogene -1.9858 0.0000
63168 ENSG00000250844 USP17L18 ubiquitin specific peptidase 17 like family member 18 -1.9858 0.0000
63167 ENSG00000165566 AMER2 APC membrane recruitment protein 2 -1.9851 0.0000
63166 ENSG00000183248 PRR36 proline rich 36 -1.9851 0.0000
63165 ENSG00000261996 novel transcript -1.9849 0.0000
63164 ENSG00000058262 SEC61A1 SEC61 translocon subunit alpha 1 -1.9845 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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