Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773734

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773734


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M361Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000254205 novel transcript 2.3219 0.0000
2 ENSG00000283412 U6 spliceosomal RNA 2.3219 0.0000
3 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.2448 0.0000
4 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 2.2146 0.0000
5 ENSG00000284135 MIR3654 microRNA 3654 2.1258 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1033 0.0000
7 ENSG00000201423 RN7SKP246 RN7SK pseudogene 246 2.0000 0.0035
8 ENSG00000207322 RNU1-89P RNA, U1 small nuclear 89, pseudogene 2.0000 0.0035
9 ENSG00000211974 IGHV2-70D immunoglobulin heavy variable 2-70D 2.0000 0.0000
10 ENSG00000234289 H2BS1 H2B.S histone 1 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000282556 novel transcript, antisense to PRKCDBP -1.9851 0.0000
63172 ENSG00000229142 HCG4P8 HLA complex group 4 pseudogene 8 -1.9851 0.0000
63171 ENSG00000167701 GPT glutamic--pyruvic transaminase -1.9850 0.0000
63170 ENSG00000157734 SNX22 sorting nexin 22 -1.9850 0.0000
63169 ENSG00000166341 DCHS1 dachsous cadherin-related 1 -1.9848 0.0000
63168 ENSG00000119862 LGALSL galectin like -1.9846 0.0000
63167 ENSG00000266605 LONRF2P1 LONRF2 pseudogene 1 -1.9845 0.0000
63166 ENSG00000207614 MIR193A microRNA 193a -1.9842 0.0000
63165 ENSG00000227896 novel transcript -1.9835 0.0000
63164 ENSG00000260532 novel transcript -1.9834 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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