Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773736

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773736


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M363Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.6481 0.0000
2 ENSG00000225397 pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT) 2.3219 0.0000
3 ENSG00000226680 novel transcript 2.3219 0.0004
4 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.0446 0.0000
5 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 2.0000 0.0026
6 ENSG00000261584 novel transcript 2.0000 0.0026
7 ENSG00000282865 TEC 2.0000 0.0000
8 ENSG00000284135 MIR3654 microRNA 3654 1.9757 0.0000
9 ENSG00000134538 SLCO1B1 solute carrier organic anion transporter family member 1B1 1.8962 0.0000
10 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 1.6952 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000229257 novel transcript, antisense to SAPCD2 -2.0123 0.0000
63172 ENSG00000265744 MIR4427 microRNA 4427 -2.0120 0.0000
63171 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.0120 0.0000
63170 ENSG00000120324 PCDHB10 protocadherin beta 10 -2.0117 0.0000
63169 ENSG00000235194 PPP1R3E protein phosphatase 1 regulatory subunit 3E -2.0113 0.0000
63168 ENSG00000166483 WEE1 WEE1 G2 checkpoint kinase -2.0113 0.0000
63167 ENSG00000205269 TMEM170B transmembrane protein 170B -2.0109 0.0000
63166 ENSG00000282816 novel transcript, antisense to NEFH -2.0106 0.0000
63165 ENSG00000267042 novel transcript, antisense to CCR10 -2.0105 0.0000
63164 ENSG00000175893 ZDHHC21 zinc finger DHHC-type palmitoyltransferase 21 -2.0103 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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