Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773737

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773737


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M364Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252922 RNU6-365P RNA, U6 small nuclear 365, pseudogene 2.3219 0.0006
2 ENSG00000258648 UBE2CP1 ubiquitin conjugating enzyme E2 C pseudogene 1 2.3219 0.0006
3 ENSG00000260973 novel transcript 2.3219 0.0000
4 ENSG00000279706 TEC 2.2925 0.0000
5 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0984 0.0000
6 ENSG00000255215 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene 2.0566 0.0000
7 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 2.0000 0.0037
9 ENSG00000213285 RPL23AP45 ribosomal protein L23a pseudogene 45 2.0000 0.0037
10 ENSG00000233254 RPL21P134 ribosomal protein L21 pseudogene 134 2.0000 0.0000
63164 ENSG00000273362 novel transcript -2.1292 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000282143 novel transcript -2.1310 0.0000
63172 ENSG00000265296 FEM1AP2 fem-1 homolog A pseudogene 2 -2.1310 0.0000
63171 ENSG00000187900 OR5H7P olfactory receptor family 5 subfamily H member 7 pseudogene -2.1308 0.2337
63170 ENSG00000266017 MIR4477B microRNA 4477b -2.1304 0.0000
63169 ENSG00000258987 novel transcript, antisense to ASB2 -2.1303 0.0000
63168 ENSG00000148730 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 -2.1300 0.0000
63167 ENSG00000152467 ZSCAN1 zinc finger and SCAN domain containing 1 -2.1299 0.0000
63166 ENSG00000130182 ZSCAN10 zinc finger and SCAN domain containing 10 -2.1297 0.0000
63165 ENSG00000065978 YBX1 Y-box binding protein 1 -2.1294 0.0000
63164 ENSG00000273362 novel transcript -2.1292 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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