Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773738

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773738


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M365Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.5111 0.0000
2 ENSG00000212549 RNA5SP354 RNA, 5S ribosomal pseudogene 354 2.3219 0.0000
3 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.3219 0.0004
4 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.3051 0.0000
5 ENSG00000276183 U6 spliceosomal RNA 2.2440 0.0000
6 ENSG00000224326 novel transcript 2.0897 0.0000
7 ENSG00000261036 novel transcript 2.0850 0.0000
8 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.0000 0.0027
9 ENSG00000231238 LINC00349 long intergenic non-protein coding RNA 349 2.0000 0.0027
10 ENSG00000233882 LINC01680 long intergenic non-protein coding RNA 1680 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000122691 TWIST1 twist family bHLH transcription factor 1 -2.0835 0.0000
63172 ENSG00000188042 ARL4C ADP ribosylation factor like GTPase 4C -2.0829 0.0000
63171 ENSG00000177989 ODF3B outer dense fiber of sperm tails 3B -2.0829 0.0000
63170 ENSG00000221038 RNU6ATAC7P RNA, U6atac small nuclear 7, pseudogene -2.0824 0.0000
63169 ENSG00000253508 novel transcript -2.0823 0.0000
63168 ENSG00000119689 DLST dihydrolipoamide S-succinyltransferase -2.0814 0.0000
63167 ENSG00000244006 RN7SL799P RNA, 7SL, cytoplasmic 799, pseudogene -2.0809 0.0000
63166 ENSG00000266522 chromosome 9 open reading frame 86 pseudogene -2.0809 0.0000
63165 ENSG00000171873 ADRA1D adrenoceptor alpha 1D -2.0801 0.0000
63164 ENSG00000273342 novel transcript -2.0800 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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