Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773739

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773739


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M366Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000276003 NA 3.1699 0.0000
2 ENSG00000276738 zinc finger protein 799 (ZNF799) pseudogene 2.8873 0.0000
3 ENSG00000278580 piggyBac transposable element derived 4 (PGBD4) pseudogene 2.8774 0.0000
4 ENSG00000225715 PSMA1P1 PSMA1 pseudogene 1 2.8074 0.0000
5 ENSG00000257845 LINC02294 long intergenic non-protein coding RNA 2294 2.8074 0.0000
6 ENSG00000280056 tec 2.8074 0.0000
7 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.7565 0.0000
8 ENSG00000208839 SNORA35 small nucleolar RNA, H/ACA box 35 2.5850 0.0000
9 ENSG00000275567 novel transcript, sense intronic to ABCC9 2.5850 0.0000
10 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.4853 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000271555 novel transcript, sense intronic KANK1 -2.2303 0.0000
63172 ENSG00000270100 novel transcript -2.2300 0.0000
63171 ENSG00000176058 TPRN taperin -2.2295 0.0000
63170 ENSG00000231090 MIR4422HG MIR4422 host gene -2.2286 0.0000
63169 ENSG00000248590 GLDCP1 glycine decarboxylase pseudogene 1 -2.2285 0.0000
63168 ENSG00000137449 CPEB2 cytoplasmic polyadenylation element binding protein 2 -2.2283 0.0000
63167 ENSG00000181856 SLC2A4 solute carrier family 2 member 4 -2.2281 0.0000
63166 ENSG00000267317 novel transcript, antisense to APC2 -2.2279 0.0000
63165 ENSG00000238358 novel transcript -2.2278 0.0000
63164 ENSG00000259840 novel transcript -2.2277 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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