Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773740

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773740


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M367Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253108 novel transcript 3.3219 0.0000
2 ENSG00000283463 HSFX4 heat shock transcription factor family, X-linked member 4 3.1699 0.0000
3 ENSG00000254482 chaperonin containing TCP1, subunit 6A (zeta 1) (CCT6A) pseudogene 3.0000 0.0000
4 ENSG00000252959 RNA5SP170 RNA, 5S ribosomal pseudogene 170 2.7438 0.0000
5 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene 2.6049 0.0000
6 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 2.4117 0.0000
7 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.3456 0.0000
8 ENSG00000214628 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 2.3219 0.0000
9 ENSG00000223733 RPL18AP14 ribosomal protein L18a pseudogene 14 2.3219 0.0003
10 ENSG00000235777 DPYD-AS2 DPYD antisense RNA 2 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000125384 PTGER2 prostaglandin E receptor 2 -2.2173 0.0000
63172 ENSG00000270378 ribosomal protein L36a-like (RPL36AL) pseudogene -2.2171 0.0000
63171 ENSG00000082497 SERTAD4 SERTA domain containing 4 -2.2166 0.0000
63170 ENSG00000217128 FNIP1 folliculin interacting protein 1 -2.2163 0.0000
63169 ENSG00000163064 EN1 engrailed homeobox 1 -2.2151 0.0000
63167 ENSG00000232875 HMGN2P35 high mobility group nucleosomal binding domain 2 pseudogene 35 -2.2146 0.3796
63166 ENSG00000231992 novel transcript -2.2142 0.0000
63165 ENSG00000207951 MIR561 microRNA 561 -2.2141 0.0000
63164 ENSG00000185608 MRPL40 mitochondrial ribosomal protein L40 -2.2137 0.0000
10 ENSG00000235777 DPYD-AS2 DPYD antisense RNA 2 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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