Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773741

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773741


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M368Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000131721 RHOXF2 Rhox homeobox family member 2 2.5850 0.0000
2 ENSG00000257528 KRT8P19 keratin 8 pseudogene 19 2.3219 0.0000
3 ENSG00000280837 CPS1-IT1 CPS1 intronic transcript 1 2.3219 0.0000
4 ENSG00000198277 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.2340 0.0000
5 ENSG00000201959 Y RNA 2.0000 0.0000
6 ENSG00000233448 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 2.0000 0.0000
7 ENSG00000236468 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene 2.0000 0.0000
8 ENSG00000240241 novel transcript 2.0000 0.0021
9 ENSG00000258225 novel transcript, antisense to NAV3 2.0000 0.0021
10 ENSG00000259628 novel transcript 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000177283 FZD8 frizzled class receptor 8 -2.0932 0.0000
63172 ENSG00000102109 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor -2.0929 0.0000
63171 ENSG00000198169 ZNF251 zinc finger protein 251 -2.0928 0.0000
63170 ENSG00000184304 PRKD1 protein kinase D1 -2.0924 0.0000
63169 ENSG00000044012 GUCA2B guanylate cyclase activator 2B -2.0922 0.0000
63168 ENSG00000250913 USP17L23 ubiquitin specific peptidase 17 like family member 23 -2.0921 0.0000
63167 ENSG00000270424 PRKC, apoptosis, WT1, regulator (PAWR) pseudogene -2.0919 0.0000
63166 ENSG00000156232 WHAMM WASP homolog associated with actin, golgi membranes and microtubules -2.0916 0.0000
63165 ENSG00000184709 LRRC26 leucine rich repeat containing 26 -2.0915 0.0000
63164 ENSG00000145002 FAM86B2 family with sequence similarity 86 member B2 -2.0914 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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