Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773742

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773742


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M369Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230617 pseudogene similar to part of proteasome (prosome, macropain) subunit, beta type, 5 PSMB5 3.1699 0.0000
2 ENSG00000248874 C5orf17 chromosome 5 putative open reading frame 17 3.1699 0.0000
3 ENSG00000266479 heat shock 70kDa protein 9 (mortalin) (HSPA9) pseudogene 3.0000 0.0000
4 ENSG00000230418 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 2.8074 0.0000
5 ENSG00000276841 SYF2 pre-mRNA-splicing factor (SYF2) pseudogene 2.8074 0.0000
6 ENSG00000207255 RNU6-1117P RNA, U6 small nuclear 1117, pseudogene 2.3219 0.0000
7 ENSG00000218757 60S ribosomal protein L17 (RPL17) pseudogene 2.3219 0.0000
8 ENSG00000229013 GTPase activating protein (SH3 domain) binding protein 1 (G3BP1) pseudogene 2.3219 0.0000
9 ENSG00000238842 RNU7-106P RNA, U7 small nuclear 106 pseudogene 2.3219 0.0002
10 ENSG00000253584 novel transcript 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000260992 DOCK9-DT DOCK9 divergent transcript -2.4826 0.0000
63172 ENSG00000162032 SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 -2.4824 0.0000
63171 ENSG00000145604 SKP2 S-phase kinase associated protein 2 -2.4822 0.0000
63170 ENSG00000251823 RNA5SP162 RNA, 5S ribosomal pseudogene 162 -2.4818 0.0000
63169 ENSG00000186212 SOWAHB sosondowah ankyrin repeat domain family member B -2.4818 0.0000
63168 ENSG00000142684 ZNF593 zinc finger protein 593 -2.4802 0.0000
63167 ENSG00000185950 IRS2 insulin receptor substrate 2 -2.4797 0.0000
63166 ENSG00000270891 coiled-coil domain containing 93 (CCDC93) pseudogene -2.4792 0.0000
63165 ENSG00000198783 ZNF830 zinc finger protein 830 -2.4788 0.0000
63164 ENSG00000173334 TRIB1 tribbles pseudokinase 1 -2.4786 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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