Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773743

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773743


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M370Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000213252 pyridine nucleotide-disulphide oxidoreductase domain 1 (PYROXD1) pseudogene 2.5850 0.0000
2 ENSG00000214415 GNAT3 G protein subunit alpha transducin 3 2.5850 0.0000
3 ENSG00000221710 MIR1298 microRNA 1298 2.4973 0.0000
4 ENSG00000260126 novel transcript 2.3219 0.0000
5 ENSG00000251586 TET2-AS1 TET2 antisense RNA 1 2.1230 0.0000
6 ENSG00000207515 RNU6-555P RNA, U6 small nuclear 555, pseudogene 2.0000 0.0018
7 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 2.0000 0.0018
8 ENSG00000232576 ubiquitin-conjugating enzyme E2D 2 (UBC4\/5 homolog, yeast) (UBE2D2) pseudogene 2.0000 0.0000
10 ENSG00000250219 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 2.0000 0.0018
63164 ENSG00000153132 CLGN calmegin -2.2341 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000256463 SALL3 spalt like transcription factor 3 -2.2357 0.0000
63172 ENSG00000223791 UBE2E1-AS1 UBE2E1 antisense RNA 1 -2.2356 0.0000
63171 ENSG00000168994 PXDC1 PX domain containing 1 -2.2355 0.0000
63170 ENSG00000008277 ADAM22 ADAM metallopeptidase domain 22 -2.2354 0.0000
63169 ENSG00000112685 EXOC2 exocyst complex component 2 -2.2353 0.0000
63168 ENSG00000205716 FAM183DP family with sequence similarity 183 member D, pseudogene -2.2349 0.0000
63167 ENSG00000202569 MIR146B microRNA 146b -2.2348 0.0000
63166 ENSG00000129071 MBD4 methyl-CpG binding domain 4, DNA glycosylase -2.2344 0.0000
63165 ENSG00000197451 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B -2.2343 0.0000
63164 ENSG00000153132 CLGN calmegin -2.2341 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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