Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773744

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773744


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M371Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223786 novel transcript 2.3219 0.0003
2 ENSG00000257855 p53 and DNA-damage regulated 1 (PDRG1) pseudogene 2.3219 0.0003
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.2368 0.0000
4 ENSG00000227830 TRIM60P3Y tripartite motif containing 60 pseudogene 3, Y-linked 2.1610 0.0000
5 ENSG00000260747 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 (ATP5F1) pseudogene 2.1319 0.0000
6 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.0054 0.0000
7 ENSG00000199127 MIR383 microRNA 383 2.0000 0.0021
8 ENSG00000200622 RNU6-1059P RNA, U6 small nuclear 1059, pseudogene 2.0000 0.0021
9 ENSG00000206800 RNY3P7 RNY3 pseudogene 7 2.0000 0.0021
10 ENSG00000237213 RPL23AP22 ribosomal protein L23a pseudogene 22 2.0000 0.0021

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000171161 ZNF672 zinc finger protein 672 -2.1781 0.0000
63172 ENSG00000112309 B3GAT2 beta-1,3-glucuronyltransferase 2 -2.1777 0.0000
63171 ENSG00000116903 EXOC8 exocyst complex component 8 -2.1776 0.0000
63170 ENSG00000260410 polo-like kinase 1 (PLK1) pseudogene -2.1770 0.0000
63169 ENSG00000139517 LNX2 ligand of numb-protein X 2 -2.1764 0.0000
63168 ENSG00000274977 galactose-3-O-sulfotransferase 4 (GAL3ST4) pseudogene -2.1750 0.0000
63167 ENSG00000147571 CRH corticotropin releasing hormone -2.1747 0.0000
63166 ENSG00000118680 MYL12B myosin light chain 12B -2.1744 0.0000
63165 ENSG00000206538 VGLL3 vestigial like family member 3 -2.1738 0.0000
63164 ENSG00000270638 novel transcript -2.1734 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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