Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773746

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773746


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M373Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000243872 RN7SL464P RNA, 7SL, cytoplasmic 464, pseudogene 3.0000 0.0000
2 ENSG00000248112 novel transcript 3.0000 0.0000
3 ENSG00000251691 UDP glucuronosyltransferase 2 family, polypeptide A3 (UGT2A3) pseudogene 3.0000 0.0000
4 ENSG00000241008 ribosomal protein L7a (RPL7A) pseudogene 2.8074 0.0000
5 ENSG00000225842 GGCTP3 GGCT pseudogene 3 2.6356 0.0000
6 ENSG00000200884 Y RNA 2.5850 0.0001
7 ENSG00000221891 FAM218BP family with sequence similarity 218 member B, pseudogene 2.5850 0.0001
8 ENSG00000226376 novel transcript 2.5850 0.0001
9 ENSG00000248944 FAM90A6P family with sequence similarity 90 member A6, pseudogene 2.5850 0.0000
10 ENSG00000284135 MIR3654 microRNA 3654 2.4634 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63172 ENSG00000270433 H3P37 H3 histone pseudogene 37 -2.1834 0.0000
63171 ENSG00000121853 GHSR growth hormone secretagogue receptor -2.1832 0.0000
63170 ENSG00000146674 IGFBP3 insulin like growth factor binding protein 3 -2.1832 0.0000
63169 ENSG00000229066 novel transcript -2.1826 0.0000
63168 ENSG00000100528 CNIH1 cornichon family AMPA receptor auxiliary protein 1 -2.1824 0.0000
63167 ENSG00000087085 ACHE acetylcholinesterase (Cartwright blood group) -2.1818 0.0000
63166 ENSG00000185915 KLHL34 kelch like family member 34 -2.1816 0.0000
63165 ENSG00000271296 H3P19 H3 histone pseudogene 19 -2.1814 0.2860
63164 ENSG00000102317 RBM3 RNA binding motif protein 3 -2.1801 0.0000
10 ENSG00000284135 MIR3654 microRNA 3654 2.4634 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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