Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773747

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773747


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M374Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000206950 Y RNA 3.0000 0.0000
2 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.8190 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.3678 0.0000
4 ENSG00000270763 DDX43P2 DEAD-box helicase 43 pseudogene 2 2.3219 0.0006
5 ENSG00000213110 RNF11P1 ring finger protein 11 pseudogene 1 2.1732 0.0000
6 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 2.1273 0.0000
7 ENSG00000224712 NPIPA3 nuclear pore complex interacting protein family member A3 2.0000 0.0000
8 ENSG00000258844 novel transcript 2.0000 0.0039
9 ENSG00000260933 geminin, DNA replication inhibitor (GMNN) pseudogene 2.0000 0.0039
10 ENSG00000261523 novel transcript, antisense to a novel member of the nuclear pore complex interacting protein-like NPIPL gene family 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000278901 novel transcript, antisense to PCDHA13 -2.1085 0.0000
63172 ENSG00000198892 SHISA4 shisa family member 4 -2.1085 0.0000
63171 ENSG00000226747 FSIP2-AS2 FSIP2 antisense RNA 2 -2.1083 0.0000
63170 ENSG00000124302 CHST8 carbohydrate sulfotransferase 8 -2.1083 0.0000
63169 ENSG00000169727 GPS1 G protein pathway suppressor 1 -2.1082 0.0000
63168 ENSG00000261423 TMEM202-AS1 TMEM202 antisense RNA 1 -2.1081 0.0000
63167 ENSG00000227538 HNRNPFP1 heterogeneous nuclear ribonucleoprotein F pseudogene 1 -2.1077 0.0000
63166 ENSG00000174586 ZNF497 zinc finger protein 497 -2.1074 0.0000
63165 ENSG00000214357 NEURL1B neuralized E3 ubiquitin protein ligase 1B -2.1073 0.0000
63164 ENSG00000177683 THAP5 THAP domain containing 5 -2.1065 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...