Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773748

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773748


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M375Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 3.1693 0.0000
2 ENSG00000070501 POLB DNA polymerase beta 2.7823 0.0000
3 ENSG00000240395 RPL5P23 ribosomal protein L5 pseudogene 23 2.7823 0.0000
4 ENSG00000111057 KRT18 keratin 18 2.6595 0.0000
5 ENSG00000263508 novel transcript 2.5850 0.0000
7 ENSG00000217889 KRT18P48 keratin 18 pseudogene 48 2.5355 0.0000
9 ENSG00000245667 novel transcript 2.4526 0.0000
10 ENSG00000170421 KRT8 keratin 8 2.4505 0.0000
63164 ENSG00000237224 novel transcript -1.0000 0.5967
63165 ENSG00000237267 LINC01519 long intergenic non-protein coding RNA 1519 -1.0000 1.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000238419 RNU7-186P RNA, U7 small nuclear 186 pseudogene -1.0000 0.0001
63172 ENSG00000238048 ART2P ADP-ribosyltransferase 2, pseudogene -1.0000 1.0000
63171 ENSG00000238018 novel transcript, antisense to SPTBN1 -1.0000 1.0000
63170 ENSG00000237624 OXCT2P1 3-oxoacid CoA-transferase 2 pseudogene 1 -1.0000 0.5795
63169 ENSG00000237605 DYRK3-AS1 DYRK3 antisense RNA 1 -1.0000 1.0000
63168 ENSG00000237338 FTCD-AS1 FTCD antisense RNA 1 -1.0000 0.1289
63167 ENSG00000237286 CARD11-AS1 CARD11 antisense RNA 1 -1.0000 0.3471
63166 ENSG00000237276 ANO7L1 anoctamin 7 like 1 (pseudogene) -1.0000 0.0007
63165 ENSG00000237267 LINC01519 long intergenic non-protein coding RNA 1519 -1.0000 1.0000
63164 ENSG00000237224 novel transcript -1.0000 0.5967

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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