Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773749

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773749


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M376Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.6419 0.0000
2 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.6286 0.0000
3 ENSG00000284135 MIR3654 microRNA 3654 2.2523 0.0000
4 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.9047 0.0000
6 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 1.8713 0.0000
7 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 1.7575 0.0000
8 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.7225 0.0000
9 ENSG00000233328 PFN1P1 profilin 1 pseudogene 1 1.6793 0.0000
10 ENSG00000242175 RN7SL127P RNA, 7SL, cytoplasmic 127, pseudogene 1.6610 0.0000
63164 ENSG00000213225 NOC2LP1 NOC2 like nucleolar associated transcriptional repressor pseudogene 1 -2.0545 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000176593 novel transcript, antisense to ZNF606 -2.0557 0.0000
63172 ENSG00000177697 CD151 CD151 molecule (Raph blood group) -2.0556 0.0000
63171 ENSG00000266124 MIR5587 microRNA 5587 -2.0554 0.0000
63170 ENSG00000196361 ELAVL3 ELAV like RNA binding protein 3 -2.0554 0.0000
63169 ENSG00000279928 DEAD/H-box helicase 11 (DDX11) pseudogene -2.0554 0.0000
63168 ENSG00000274712 bromodomain PHD finger transcription factor (BPTF) pseudogene -2.0553 0.0000
63167 ENSG00000274139 novel transcript -2.0551 0.0000
63166 ENSG00000272395 IFNL4 interferon lambda 4 (gene/pseudogene) -2.0551 0.0000
63165 ENSG00000188130 MAPK12 mitogen-activated protein kinase 12 -2.0546 0.0000
63164 ENSG00000213225 NOC2LP1 NOC2 like nucleolar associated transcriptional repressor pseudogene 1 -2.0545 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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