Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773750

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773750


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M377Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212628 RNA5SP241 RNA, 5S ribosomal pseudogene 241 2.8074 0.0000
2 ENSG00000243675 RPL35AP9 ribosomal protein L35a pseudogene 9 2.7925 0.0000
3 ENSG00000253934 MRPL49P2 mitochondrial ribosomal protein L49 pseudogene 2 2.5850 0.0000
4 ENSG00000265165 MIR4307 microRNA 4307 2.5850 0.0001
6 ENSG00000206806 Y RNA 2.3219 0.0006
7 ENSG00000216913 pseudogene similar to part of nuclear transport receptor MTR10A 2.3219 0.0006
8 ENSG00000227854 ribosomal protein L39 (RPL39) pseudogene 2.3219 0.0000
9 ENSG00000229600 novel transcript 2.3219 0.0006
10 ENSG00000251452 adrenocortical dysplasia homolog (mouse) (ACD) pseudogene 2.3219 0.0006
63164 ENSG00000131188 PRR7 proline rich 7, synaptic -2.2823 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000174740 PABPC5 poly(A) binding protein cytoplasmic 5 -2.2857 0.0001
63172 ENSG00000230393 novel transcript -2.2856 0.0000
63171 ENSG00000223969 novel transcript -2.2852 0.0000
63170 ENSG00000185347 TEDC1 tubulin epsilon and delta complex 1 -2.2849 0.0000
63169 ENSG00000106780 MEGF9 multiple EGF like domains 9 -2.2846 0.0000
63168 ENSG00000048392 RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B -2.2838 0.0000
63167 ENSG00000283857 MIR1247 microRNA 1247 -2.2836 0.0000
63166 ENSG00000230500 MKX-AS1 MKX antisense RNA 1 -2.2835 0.0000
63165 ENSG00000184478 OR56A3 olfactory receptor family 56 subfamily A member 3 -2.2827 0.0000
63164 ENSG00000131188 PRR7 proline rich 7, synaptic -2.2823 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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