Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773751

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773751


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M378Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199601 RNU6-562P RNA, U6 small nuclear 562, pseudogene 3.9069 0.0000
2 ENSG00000229661 BUD31P2 BUD31 homolog pseudogene 2 3.9069 0.0000
3 ENSG00000007129 CEACAM21 CEA cell adhesion molecule 21 3.6427 0.0000
4 ENSG00000276600 RAB7B RAB7B, member RAS oncogene family 3.4594 0.0000
5 ENSG00000100060 MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase 3.3900 0.0000
6 ENSG00000231616 novel transcript, antisense to KIF27 3.3219 0.0000
7 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 3.2823 0.0000
8 ENSG00000081870 HSPB11 heat shock protein family B (small) member 11 3.1699 0.0000
9 ENSG00000066827 ZFAT zinc finger and AT-hook domain containing 3.0000 0.0001
10 ENSG00000110944 IL23A interleukin 23 subunit alpha 3.0000 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000258973 novel transcript -1.9444 0.0000
63172 ENSG00000129467 ADCY4 adenylate cyclase 4 -1.9444 0.0000
63171 ENSG00000129465 RIPK3 receptor interacting serine/threonine kinase 3 -1.9444 0.0000
63170 ENSG00000173442 EHBP1L1 EH domain binding protein 1 like 1 -1.9424 0.0000
63169 ENSG00000261286 ATP2C2-AS1 ATP2C2 antisense RNA 1 -1.9421 0.0000
63168 ENSG00000120129 DUSP1 dual specificity phosphatase 1 -1.9417 0.0000
63167 ENSG00000232871 SEC1P secretory blood group 1, pseudogene -1.9416 0.0000
63166 ENSG00000142233 NTN5 netrin 5 -1.9416 0.0000
63165 ENSG00000128581 IFT22 intraflagellar transport 22 -1.9414 0.0000
63164 ENSG00000254700 DEFB131C defensin beta 131C (pseudogene) -1.9407 0.0020

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...