Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773752

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773752


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M379Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000200151 RN7SKP231 RN7SK pseudogene 231 3.5850 0.0000
2 ENSG00000257807 starch binding domain 1 (STBD1) pseudogene 3.5850 0.0000
3 ENSG00000258877 ATP5F1AP4 ATP synthase F1 subunit alpha pseudogene 4 3.5850 0.0000
4 ENSG00000172209 GPR22 G protein-coupled receptor 22 3.3219 0.0000
5 ENSG00000248362 novel transcript 3.3219 0.0000
6 ENSG00000251320 novel transcript 3.3219 0.0000
7 ENSG00000258225 novel transcript, antisense to NAV3 3.3219 0.0000
8 ENSG00000242781 LINC02050 long intergenic non-protein coding RNA 2050 3.1699 0.0000
9 ENSG00000240950 ribosomal protein L8 (RPL8) pseudogene 3.0349 0.0000
10 ENSG00000199786 RNA5SP188 RNA, 5S ribosomal pseudogene 188 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000065183 WDR3 WD repeat domain 3 -2.5874 0.0000
63172 ENSG00000100036 SLC35E4 solute carrier family 35 member E4 -2.5870 0.0000
63171 ENSG00000267084 COX20 Cox2 chaperone homolog (S. cerevisiae) (COX20) pseudogene -2.5869 0.0000
63170 ENSG00000188223 novel protein -2.5869 0.0000
63169 ENSG00000249328 novel transcript -2.5868 0.0000
63168 ENSG00000198042 MAK16 MAK16 homolog -2.5861 0.0000
63167 ENSG00000199905 RNU6-492P RNA, U6 small nuclear 492, pseudogene -2.5858 0.0000
63166 ENSG00000223991 novel transcript -2.5854 0.0000
63165 ENSG00000282924 ankyrin repeat domain 36 (ANKRD36) pseudogene -2.5850 0.5915
63164 ENSG00000279437 TEC -2.5850 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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