Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773753

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773753


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M380Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 4.9981 0.0000
2 ENSG00000245667 novel transcript 4.4087 0.0000
3 ENSG00000269968 novel transcript, antisense to GAPDH 4.4087 0.0000
4 ENSG00000184140 OR4F6 olfactory receptor family 4 subfamily F member 6 4.0000 0.0000
5 ENSG00000261303 Golgin subfamily A pseudogene 3.9375 0.0000
6 ENSG00000268830 BNIP3P32 BCL2 interacting protein 3 pseudogene 32 3.9069 0.0002
7 ENSG00000170421 KRT8 keratin 8 3.8551 0.0000
8 ENSG00000197721 CR1L complement C3b/C4b receptor 1 like 3.8074 0.0000
9 ENSG00000244703 CD46P1 CD46 molecule pseudogene 1 3.8074 0.0000
10 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 3.7418 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000211625 IGKV3D-20 immunoglobulin kappa variable 3D-20 -2.0000 0.1030
63172 ENSG00000207924 MIR196A2 microRNA 196a-2 -2.0000 0.0000
63171 ENSG00000206785 SNORA15B-2 small nucleolar RNA, H/ACA box 15B-2 -2.0000 0.0000
63170 ENSG00000206634 SNORA22 small nucleolar RNA, H/ACA box 22 -2.0000 0.0000
63169 ENSG00000205334 LINC01460 long intergenic non-protein coding RNA 1460 -2.0000 0.0106
63168 ENSG00000205108 FAM205A family with sequence similarity 205 member A -2.0000 0.1030
63167 ENSG00000204397 CARD16 caspase recruitment domain family member 16 -2.0000 0.0106
63166 ENSG00000204272 NBDY negative regulator of P-body association -2.0000 0.0011
63165 ENSG00000200806 RNA5SP275 RNA, 5S ribosomal pseudogene 275 -2.0000 0.1030
63164 ENSG00000200390 Y RNA -2.0000 0.1030

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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