Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773754

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773754


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7.02E+21Sequence Read ArchiveSRP074598SRP074598_M381Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeBlastocystHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000075624 ACTB actin beta 4.0198 0.0000
2 ENSG00000229105 ASTN2-AS1 ASTN2 antisense RNA 1 3.8774 0.0000
3 ENSG00000207281 Y RNA 3.8074 0.0000
4 ENSG00000143493 INTS7 integrator complex subunit 7 3.7842 0.0000
5 ENSG00000200879 SNORD14E small nucleolar RNA, C/D box 14E 3.6962 0.0000
6 ENSG00000166796 LDHC lactate dehydrogenase C 3.6387 0.0000
7 ENSG00000072201 LNX1 ligand of numb-protein X 1 3.5850 0.0000
8 ENSG00000257025 novel transcript 3.5850 0.0000
9 ENSG00000205755 CRLF2 cytokine receptor like factor 2 3.5799 0.0000
10 ENSG00000258751 novel transcript 3.5711 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000224607 IGKV1D-27 immunoglobulin kappa variable 1D-27 (pseudogene) -1.5850 1.0000
63172 ENSG00000224042 MTND4P6 MT-ND4 pseudogene 6 -1.5850 1.0000
63171 ENSG00000223349 KLF2P3 Kruppel like factor 2 pseudogene 3 -1.5850 1.0000
63170 ENSG00000222338 RNU6-174P RNA, U6 small nuclear 174, pseudogene -1.5850 1.0000
63169 ENSG00000213411 RBM22P2 RNA binding motif protein 22 pseudogene 2 -1.5850 1.0000
63168 ENSG00000213155 zinc finger, CCHC domain containing 10 (ZCCHC10) pseudogene -1.5850 0.6012
63167 ENSG00000207775 MIR548A1 microRNA 548a-1 -1.5850 1.0000
63166 ENSG00000207347 RNU6-306P RNA, U6 small nuclear 306, pseudogene -1.5850 0.6144
63165 ENSG00000204428 LY6G5C lymphocyte antigen 6 family member G5C -1.5850 0.0399
10 ENSG00000258751 novel transcript 3.5711 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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